Index of /doc/cmds

• Parent Directory
• #calc_fofc_diff_map.cmds#
• #calc_fofc_map.cmds#
• #image_map_mask.cmds#
• #load_nice_sel.com#
• #load_utils.com#
• #mini_body.cmds#
• #re_phase.cmds#
• #trace_chain_hybrid.cmds#
• #xray_build_weight_val.cmds#
• .DS_Store
• .main
• anal_3d_image.cmds
• anal_c-omit.cmds
• anal_c-omit_active.cmds
• anal_c-real.cmds
• anal_ener.cmds
• anal_ener.cmds~
• anal_graph_correl.cmds
• anal_graph_rval.cmds
• anal_graph_temp.cmds
• anal_group.cmds
• anal_image.cmds
• anal_image.cmds~
• anal_init.cmds
• anal_kind.cmds
• anal_param_angle.cmds
• anal_param_bond.cmds
• anal_r-omit.cmds
• anal_r-real.cmds
• anal_temp.cmds
• anal_temp.cmds~
• auto_seq.cmds
• auto_seq.cmds~
• auto_seq_do.cmds
• auto_seq_do.cmds~
• auto_stuff_between.cmds
• auto_stuff_find_chain.cmds
• auto_stuff_find_pept.cmds
• auto_stuff_find_pept.cmds~
• auto_stuff_fix_pept.cmds
• auto_stuff_fix_pept.cmds~
• auto_stuff_name_side.cmds
• auto_stuff_path.cmds
• auto_stuff_rig_main.cmds
• auto_stuff_rig_resi.cmds
• auto_stuff_rig_side.cmds
• auto_stuff_rig_side.cmds~
• auto_stuff_side.cmds
• auto_stuff_side.cmds~
• auto_stuff_torsion.cmds
• auto_stuff_weight.cmds
• auto_stuff_weight.cmds~
• auto_stuff_weight_atom.cmds
• between.rota
• bond.rota
• calc_2fofc_map.cmds
• calc_2fofc_sigma_a_map.cmds
• calc_2fofc_sigma_a_map.cmds~
• calc_aniso_coor.cmds
• calc_aniso_coor.cmds~
• calc_bulk_solv_corr.cmds
• calc_bulk_solv_corr.cmds~
• calc_fc_map.cmds
• calc_fo_map.cmds
• calc_fo_map.cmds~
• calc_fo_phase_fc.cmds
• calc_fo_phase_fc_map.cmds
• calc_fofc_diff_map.cmds
• calc_fofc_diff_map.cmds~
• calc_fofc_map.cmds
• calc_fofc_map.cmds~
• calc_kick_map.cmds
• calc_kick_omit_map.cmds
• calc_patt_fc_map.cmds
• calc_patt_map.cmds
• calc_sigma_a_map.cmds
• calc_sigma_a_map.cmds~
• center_define.cmds
• center_define.cmds~
• center_next.cmds
• center_start.cmds
• center_start.cmds~
• chain_beg.rota
• chain_end.rota
• chain_med.rota
• clone.cmds
• copy_coor.cmds
• dele_atom.cmds
• dele_res.cmds
• dens_comb.cmds
• dihed.rota
• energy_chem_off.cmds
• energy_chem_on.cmds
• energy_dens_ff.cmds
• energy_dens_off.cmds
• energy_dens_on.cmds
• energy_pair_off.cmds
• energy_pair_on.cmds
• fix_geom_peptide.cmds
• fix_geom_side.cmds
• flip.cmds
• gen_solvent.cmds
• gen_solvent.cmds~
• get_atom_file.cmds
• get_pdb_protein.cmds
• hbond_delete.cmds
• hbond_delete.cmds~
• hbond_make.cmds
• hbond_make.cmds~
• hbonds_calc.cmds
• hbonds_calc.cmds~
• hbonds_calc_main.cmds
• hbonds_calc_main.cmds~
• hist_match.com
• image_atom_ball.cmds
• image_col2_by_resi.cmds
• image_col2_by_weight.cmds
• image_col2_carbons.cmds
• image_col2_current.cmds
• image_col2_default.cmds
• image_color.cmds
• image_color_ask.cmds
• image_color_set.cmds
• image_data_rad.cmds
• image_do_beg_copy.cmds
• image_do_end_copy.cmds
• image_do_rib_line.cmds
• image_do_rib_stick.cmds
• image_do_save_view.cmds
• image_do_save_view.cmds~
• image_gen_poin_surf.cmds
• image_gen_poin_surf.cmds~
• image_light_funct.cmds
• image_light_mode.cmds
• image_map_area.cmds
• image_map_box.cmds
• image_map_contour.cmds
• image_map_envel.cmds
• image_map_erase.cmds
• image_map_lines.cmds
• image_map_mask.cmds
• image_map_off.cmds
• image_map_on.cmds
• image_map_scroll_contour.cmds
• image_map_show.cmds
• image_map_sticks.cmds
• image_map_x-ax.cmds
• image_map_y-ax.cmds
• image_map_z-ax.cmds
• image_use_active.cmds
• image_use_by_res_name.cmds
• image_use_each_ten.cmds
• image_use_history.cmds
• image_use_nohydrogens.cmds
• image_use_work.cmds
• input.cop
• invert_chain.cmds
• invert_chain.cmds~
• kick_active.cmds
• kick_add_maps.cmds
• kick_rad.cmds
• kick_seed.cmds
• load_analysis.com
• load_analysis.com~
• load_auto_seq.com
• load_auto_seq.com~
• load_auto_stuff.com
• load_auto_stuff.com~
• load_build_ext.com
• load_build_extend.com
• load_build_extend.com~
• load_center.com
• load_center.com~
• load_dens_mod.com
• load_depp_page.com
• load_depp_page.com~
• load_depp_page_2.com
• load_depp_page_2.com~
• load_energy.com
• load_energy.com~
• load_fix_geom.com
• load_hbonds.com
• load_hbonds.com~
• load_image_col.com
• load_image_col2.com
• load_image_data.com
• load_image_data.com~
• load_image_do.com
• load_image_do.com~
• load_image_light.com
• load_image_map.com
• load_image_map.com~
• load_image_map_envel.com
• load_image_sel.com
• load_image_sel.com~
• load_map_atom.com
• load_map_calc.com
• load_map_calc.com~
• load_map_edit.com
• load_map_mask.com
• load_map_mask.com~
• load_nice_sel.com
• load_nice_sel.com~
• load_refine.com
• load_rename.com
• load_rms_fit.com
• load_secondary_dna.com
• load_secondary_dna.com~
• load_trace.com
• load_trace.com~
• load_trace_old.com
• load_use.com
• load_use.com~
• load_utils.com
• load_utils.com~
• load_xray_build.com
• load_xray_build.com~
• mak_mask_skel_sym.cmds
• make_map_active.cmds
• make_map_active.cmds~
• make_map_around.cmds
• make_map_atom_diff.cmds
• make_map_fill.cmds
• make_map_from.cmds
• make_map_merge.cmds
• make_map_radius.cmds
• make_map_scale.cmds
• make_map_set.cmds
• make_topology.cmds
• make_topology.cmds~
• map_calc_kick_stuf_field.cmds
• map_mask_score_map.cmds
• map_mask_skel_clean.cmds
• map_mask_skel_gen.cmds
• map_mask_skel_gen.cmds.save
• map_mask_skel_gen.cmds~
• map_mask_skel_ima.cmds
• map_mask_skel_ima.cmds~
• map_mask_skel_inq.cmds
• map_mask_skel_sym.cmds
• map_mask_skel_sym.cmds~
• merge_res.cmds
• mini_body.cmds
• mov_rt_6.cmds
• move_rotate_6.cmds
• nmol_action.cmds
• nmol_action.cmds~
• nmol_get_other.cmds
• nmol_getput_other.cmds
• nmol_getput_other.cmds~
• nmol_getput_other.com
• nmol_getput_other.com~
• nmol_goto_seq.com
• nmol_put_other.cmds
• nmol_work_mode.cmds
• par_hem.main
• phase_comb.cmds
• phase_comb.cmds~
• re_image.cmds
• re_image.cmds~
• re_image_col.cmds
• re_image_set.cmds
• re_phase.cmds
• re_phase.cmds~
• real_atom_cros_show.cmds
• refine.cmds
• refine_b.cmds
• refine_target.cmds
• rename_atom.cmds
• rename_resi.cmds
• rename_segm.cmds
• rename_seq.cmds
• rename_seq_auto.cmds
• restore_file.cmds
• restore_file.cmds~
• rms_fit.cmds
• rotate_between.com
• rotate_bond.com
• rotate_bonds.com
• rotate_chain_beg.com
• rotate_chain_end.com
• rotate_chain_middle.com
• save_file.cmds
• save_view.cmds
• save_view.cmds~
• scnd_dna_2.cmds
• scnd_dna_2.cmds~
• second_dna_a.cmds
• secondary_dna.cmds
• secondary_dna.cmds~
• sel_active.cmds
• sel_active.cmds~
• sel_active_2res_rang.cmds
• sel_active_neigh.cmds
• sel_active_segm.cmds
• sel_active_work.cmds
• sel_active_work.cmds~
• sel_add_mode_off.cmds
• sel_add_mode_off.cmds~
• sel_add_mode_on.cmds
• sel_add_mode_on.cmds~
• sel_anchor.cmds
• sel_fix_atoms.cmds
• sel_fix_atoms.cmds~
• set_side_chain_weight.cmds
• set_temp.cmds
• show_segm.cmds
• solv_flat.cmds
• symmetry.cmds
• symmetry.cmds~
• symmetry_ca.cmds
• trace_3angl.cmds
• trace_3angl.cmds.old
• trace_3angl.cmds.orig
• trace_3angl.cmds~
• trace_NCACO.cmds
• trace_NCACO.cmds~
• trace_NCACO_accept.cmds
• trace_NCACO_accept.cmds~
• trace_atoms.cmds
• trace_buid_res.cmds
• trace_build_res.cmds
• trace_chain.cmds
• trace_chain.cmds~
• trace_chain_hybrid.cmds
• trace_chain_hybrid.cmds~
• trace_chain_old.cmds
• trace_chain_polyala.cmds
• trace_chain_polyala.cmds~
• trace_chain_skelet.cmds
• trace_chain_skelet.cmds~
• trace_chain_test.cmds
• trace_chain_test.cmds~
• trace_goto_jobs.cmds
• trace_goto_jobs.cmds~
• trace_history_to_CA.cmds
• trace_map.cmds
• trace_merge.cmds
• trace_merge.cmds~
• trace_model.cmds
• trace_model.cmds~
• trace_name_res.cmds
• trace_origin.cmds
• trace_origin.cmds~
• trace_secondary.cmds
• trace_secondary_back.cmds
• trace_secondary_clean.cmds
• trace_secondary_merge.cmds
• trace_side.cmds
• trace_side.cmds~
• trace_symm_overlaps.cmds
• trace_symm_overlaps.cmds~
• trace_to_resid.cmds
• un_do.cmds
• update_segm.cmds
• use_atoms.cmds
• use_atoms.cmds~
• utils_background_pdb.cmds
• utils_rms_fit_1_to_2.cmds
• where_is_segment.cmds
• where_is_segment.cmds~
• xray_build_weight_set.cmds
• xray_build_weight_set.cmds~
• xray_build_weight_val.cmds
• xray_build_weight_val.cmds~