all: menu html table_of_contents

menu: analysis.tex auto_seq.tex auto_stuff.tex build.tex  \
	build_extend.tex build_main.tex build_resi_auto.tex center.tex  \
	communication.tex complete_list.tex define.tex dens_mod.tex  \
	depp_mini.tex depp_pages.tex dial_ps.tex dials.tex display_long.tex  \
	display_short.tex energy.tex hbonds.tex history.tex history_flags.tex  \
	image_col.tex image_col2.tex image_data.tex image_do.tex image_light.tex  \
	image_map.tex image_map_envel.tex image_menu.tex image_sel.tex  \
	kick_stuff.tex kicks.tex make_delete.tex map_calc.tex map_edit.tex  \
	map_mask.tex menu_structure.tex minimize.tex modeler.tex nice_sel.tex  \
	nmol.tex origin_of_the_name.tex refine.tex rename.tex rms_fit.tex  \
	secondary.tex select.tex setup.tex short_energy.tex trace.tex un_do.tex  \
	use_atoms.tex utils.tex xray_build.tex 

analysis.tex: analysis.txt
	help_to_tex < analysis.txt > analysis.tex

auto_seq.tex: auto_seq.txt
	help_to_tex < auto_seq.txt > auto_seq.tex

auto_stuff.tex: auto_stuff.txt
	help_to_tex < auto_stuff.txt > auto_stuff.tex

build.tex: build.txt
	help_to_tex < build.txt > build.tex

build_extend.tex: build_extend.txt
	help_to_tex < build_extend.txt > build_extend.tex

build_main.tex: build_main.txt
	help_to_tex < build_main.txt > build_main.tex

build_resi_auto.tex: build_resi_auto.txt
	help_to_tex < build_resi_auto.txt > build_resi_auto.tex

center.tex: center.txt
	help_to_tex < center.txt > center.tex

communication.tex: communication.txt
	to_tex < communication.txt > communication.tex

complete_list.tex: complete_list.txt
	to_tex < complete_list.txt > complete_list.tex

define.tex: define.txt
	help_to_tex < define.txt > define.tex

dens_mod.tex: dens_mod.txt
	help_to_tex < dens_mod.txt > dens_mod.tex

depp_mini.tex: depp_mini.txt
	help_to_tex < depp_mini.txt > depp_mini.tex

depp_pages.tex: depp_pages.txt
	to_tex < depp_pages.txt > depp_pages.tex

dial_ps.tex: dial_ps.txt
	help_to_tex < dial_ps.txt > dial_ps.tex

dials.tex: dials.txt
	help_to_tex < dials.txt > dials.tex

display_long.tex: display_long.txt
	help_to_tex < display_long.txt > display_long.tex

display_short.tex: display_short.txt
	help_to_tex < display_short.txt > display_short.tex

energy.tex: energy.txt
	help_to_tex < energy.txt > energy.tex

hbonds.tex: hbonds.txt
	help_to_tex < hbonds.txt > hbonds.tex

history.tex: history.txt
	help_to_tex < history.txt > history.tex

history_flags.tex: history_flags.txt
	help_to_tex < history_flags.txt > history_flags.tex

image_col.tex: image_col.txt
	help_to_tex < image_col.txt > image_col.tex

image_col2.tex: image_col2.txt
	help_to_tex < image_col2.txt > image_col2.tex

image_data.tex: image_data.txt
	help_to_tex < image_data.txt > image_data.tex

image_do.tex: image_do.txt
	help_to_tex < image_do.txt > image_do.tex

image_light.tex: image_light.txt
	help_to_tex < image_light.txt > image_light.tex

image_map.tex: image_map.txt
	help_to_tex < image_map.txt > image_map.tex

image_map_envel.tex: image_map_envel.txt
	help_to_tex < image_map_envel.txt > image_map_envel.tex

image_menu.tex: image_menu.txt
	help_to_tex < image_menu.txt > image_menu.tex

image_sel.tex: image_sel.txt
	help_to_tex < image_sel.txt > image_sel.tex

kick_stuff.tex: kick_stuff.txt
	help_to_tex < kick_stuff.txt > kick_stuff.tex

kicks.tex: kicks.txt
	help_to_tex < kicks.txt > kicks.tex

make_delete.tex: make_delete.txt
	help_to_tex < make_delete.txt > make_delete.tex

map_calc.tex: map_calc.txt
	help_to_tex < map_calc.txt > map_calc.tex

map_edit.tex: map_edit.txt
	help_to_tex < map_edit.txt > map_edit.tex

map_mask.tex: map_mask.txt
	help_to_tex < map_mask.txt > map_mask.tex

menu_structure.tex: menu_structure.txt
	to_tex < menu_structure.txt > menu_structure.tex

minimize.tex: minimize.txt
	help_to_tex < minimize.txt > minimize.tex

modeler.tex: modeler.txt
	help_to_tex < modeler.txt > modeler.tex

nice_sel.tex: nice_sel.txt
	help_to_tex < nice_sel.txt > nice_sel.tex

nmol.tex: nmol.txt
	help_to_tex < nmol.txt > nmol.tex

origin_of_the_name.tex: origin_of_the_name.txt
	to_tex < origin_of_the_name.txt > origin_of_the_name.tex

refine.tex: refine.txt
	help_to_tex < refine.txt > refine.tex

rename.tex: rename.txt
	help_to_tex < rename.txt > rename.tex

rms_fit.tex: rms_fit.txt
	help_to_tex < rms_fit.txt > rms_fit.tex

secondary.tex: secondary.txt
	help_to_tex < secondary.txt > secondary.tex

select.tex: select.txt
	help_to_tex < select.txt > select.tex

setup.tex: setup.txt
	to_tex < setup.txt > setup.tex

short_energy.tex: short_energy.txt
	help_to_tex < short_energy.txt > short_energy.tex

trace.tex: trace.txt
	help_to_tex < trace.txt > trace.tex

un_do.tex: un_do.txt
	help_to_tex < un_do.txt > un_do.tex

use_atoms.tex: use_atoms.txt
	help_to_tex < use_atoms.txt > use_atoms.tex

utils.tex: utils.txt
	help_to_tex < utils.txt > utils.tex

xray_build.tex: xray_build.txt
	help_to_tex < xray_build.txt > xray_build.tex



html: analysis.html auto_seq.html auto_stuff.html build.html  \
	build_extend.html build_main.html build_resi_auto.html center.html  \
	communication.html complete_list.html define.html dens_mod.html  \
	depp_mini.html depp_pages.html dial_ps.html dials.html display_long.html  \
	display_short.html energy.html hbonds.html history.html  \
	history_flags.html image_col.html image_col2.html image_data.html  \
	image_do.html image_light.html image_map.html image_map_envel.html  \
	image_menu.html image_sel.html kick_stuff.html kicks.html  \
	make_delete.html map_calc.html map_edit.html map_mask.html  \
	menu_structure.html minimize.html modeler.html nice_sel.html nmol.html  \
	origin_of_the_name.html refine.html rename.html rms_fit.html  \
	secondary.html select.html setup.html short_energy.html trace.html  \
	un_do.html use_atoms.html utils.html xray_build.html 

analysis.html: analysis.txt
	help_to_html < analysis.txt -o analysis.html -t analysis.toc_html -q menu/ -x analysis.ind_html

auto_seq.html: auto_seq.txt
	help_to_html < auto_seq.txt -o auto_seq.html -t auto_seq.toc_html -q menu/ -x auto_seq.ind_html

auto_stuff.html: auto_stuff.txt
	help_to_html < auto_stuff.txt -o auto_stuff.html -t auto_stuff.toc_html -q menu/ -x auto_stuff.ind_html

build.html: build.txt
	help_to_html < build.txt -o build.html -t build.toc_html -q menu/ -x build.ind_html

build_extend.html: build_extend.txt
	help_to_html < build_extend.txt -o build_extend.html -t build_extend.toc_html -q menu/ -x build_extend.ind_html

build_main.html: build_main.txt
	help_to_html < build_main.txt -o build_main.html -t build_main.toc_html -q menu/ -x build_main.ind_html

build_resi_auto.html: build_resi_auto.txt
	help_to_html < build_resi_auto.txt -o build_resi_auto.html -t build_resi_auto.toc_html -q menu/ -x build_resi_auto.ind_html

center.html: center.txt
	help_to_html < center.txt -o center.html -t center.toc_html -q menu/ -x center.ind_html

communication.html: communication.txt
	to_html < communication.txt -o communication.html -t communication.toc_html -q menu/ -x communication.ind_html

complete_list.html: complete_list.txt
	to_html < complete_list.txt -o complete_list.html -t complete_list.toc_html -q menu/ -x complete_list.ind_html

define.html: define.txt
	help_to_html < define.txt -o define.html -t define.toc_html -q menu/ -x define.ind_html

dens_mod.html: dens_mod.txt
	help_to_html < dens_mod.txt -o dens_mod.html -t dens_mod.toc_html -q menu/ -x dens_mod.ind_html

depp_mini.html: depp_mini.txt
	help_to_html < depp_mini.txt -o depp_mini.html -t depp_mini.toc_html -q menu/ -x depp_mini.ind_html

depp_pages.html: depp_pages.txt
	to_html < depp_pages.txt -o depp_pages.html -t depp_pages.toc_html -q menu/ -x depp_pages.ind_html

dial_ps.html: dial_ps.txt
	help_to_html < dial_ps.txt -o dial_ps.html -t dial_ps.toc_html -q menu/ -x dial_ps.ind_html

dials.html: dials.txt
	help_to_html < dials.txt -o dials.html -t dials.toc_html -q menu/ -x dials.ind_html

display_long.html: display_long.txt
	help_to_html < display_long.txt -o display_long.html -t display_long.toc_html -q menu/ -x display_long.ind_html

display_short.html: display_short.txt
	help_to_html < display_short.txt -o display_short.html -t display_short.toc_html -q menu/ -x display_short.ind_html

energy.html: energy.txt
	help_to_html < energy.txt -o energy.html -t energy.toc_html -q menu/ -x energy.ind_html

hbonds.html: hbonds.txt
	help_to_html < hbonds.txt -o hbonds.html -t hbonds.toc_html -q menu/ -x hbonds.ind_html

history.html: history.txt
	help_to_html < history.txt -o history.html -t history.toc_html -q menu/ -x history.ind_html

history_flags.html: history_flags.txt
	help_to_html < history_flags.txt -o history_flags.html -t history_flags.toc_html -q menu/ -x history_flags.ind_html

image_col.html: image_col.txt
	help_to_html < image_col.txt -o image_col.html -t image_col.toc_html -q menu/ -x image_col.ind_html

image_col2.html: image_col2.txt
	help_to_html < image_col2.txt -o image_col2.html -t image_col2.toc_html -q menu/ -x image_col2.ind_html

image_data.html: image_data.txt
	help_to_html < image_data.txt -o image_data.html -t image_data.toc_html -q menu/ -x image_data.ind_html

image_do.html: image_do.txt
	help_to_html < image_do.txt -o image_do.html -t image_do.toc_html -q menu/ -x image_do.ind_html

image_light.html: image_light.txt
	help_to_html < image_light.txt -o image_light.html -t image_light.toc_html -q menu/ -x image_light.ind_html

image_map.html: image_map.txt
	help_to_html < image_map.txt -o image_map.html -t image_map.toc_html -q menu/ -x image_map.ind_html

image_map_envel.html: image_map_envel.txt
	help_to_html < image_map_envel.txt -o image_map_envel.html -t image_map_envel.toc_html -q menu/ -x image_map_envel.ind_html

image_menu.html: image_menu.txt
	help_to_html < image_menu.txt -o image_menu.html -t image_menu.toc_html -q menu/ -x image_menu.ind_html

image_sel.html: image_sel.txt
	help_to_html < image_sel.txt -o image_sel.html -t image_sel.toc_html -q menu/ -x image_sel.ind_html

kick_stuff.html: kick_stuff.txt
	help_to_html < kick_stuff.txt -o kick_stuff.html -t kick_stuff.toc_html -q menu/ -x kick_stuff.ind_html

kicks.html: kicks.txt
	help_to_html < kicks.txt -o kicks.html -t kicks.toc_html -q menu/ -x kicks.ind_html

make_delete.html: make_delete.txt
	help_to_html < make_delete.txt -o make_delete.html -t make_delete.toc_html -q menu/ -x make_delete.ind_html

map_calc.html: map_calc.txt
	help_to_html < map_calc.txt -o map_calc.html -t map_calc.toc_html -q menu/ -x map_calc.ind_html

map_edit.html: map_edit.txt
	help_to_html < map_edit.txt -o map_edit.html -t map_edit.toc_html -q menu/ -x map_edit.ind_html

map_mask.html: map_mask.txt
	help_to_html < map_mask.txt -o map_mask.html -t map_mask.toc_html -q menu/ -x map_mask.ind_html

menu_structure.html: menu_structure.txt
	to_html < menu_structure.txt -o menu_structure.html -t menu_structure.toc_html -q menu/ -x menu_structure.ind_html

minimize.html: minimize.txt
	help_to_html < minimize.txt -o minimize.html -t minimize.toc_html -q menu/ -x minimize.ind_html

modeler.html: modeler.txt
	help_to_html < modeler.txt -o modeler.html -t modeler.toc_html -q menu/ -x modeler.ind_html

nice_sel.html: nice_sel.txt
	help_to_html < nice_sel.txt -o nice_sel.html -t nice_sel.toc_html -q menu/ -x nice_sel.ind_html

nmol.html: nmol.txt
	help_to_html < nmol.txt -o nmol.html -t nmol.toc_html -q menu/ -x nmol.ind_html

origin_of_the_name.html: origin_of_the_name.txt
	to_html < origin_of_the_name.txt -o origin_of_the_name.html -t origin_of_the_name.toc_html -q menu/ -x origin_of_the_name.ind_html

refine.html: refine.txt
	help_to_html < refine.txt -o refine.html -t refine.toc_html -q menu/ -x refine.ind_html

rename.html: rename.txt
	help_to_html < rename.txt -o rename.html -t rename.toc_html -q menu/ -x rename.ind_html

rms_fit.html: rms_fit.txt
	help_to_html < rms_fit.txt -o rms_fit.html -t rms_fit.toc_html -q menu/ -x rms_fit.ind_html

secondary.html: secondary.txt
	help_to_html < secondary.txt -o secondary.html -t secondary.toc_html -q menu/ -x secondary.ind_html

select.html: select.txt
	help_to_html < select.txt -o select.html -t select.toc_html -q menu/ -x select.ind_html

setup.html: setup.txt
	to_html < setup.txt -o setup.html -t setup.toc_html -q menu/ -x setup.ind_html

short_energy.html: short_energy.txt
	help_to_html < short_energy.txt -o short_energy.html -t short_energy.toc_html -q menu/ -x short_energy.ind_html

trace.html: trace.txt
	help_to_html < trace.txt -o trace.html -t trace.toc_html -q menu/ -x trace.ind_html

un_do.html: un_do.txt
	help_to_html < un_do.txt -o un_do.html -t un_do.toc_html -q menu/ -x un_do.ind_html

use_atoms.html: use_atoms.txt
	help_to_html < use_atoms.txt -o use_atoms.html -t use_atoms.toc_html -q menu/ -x use_atoms.ind_html

utils.html: utils.txt
	help_to_html < utils.txt -o utils.html -t utils.toc_html -q menu/ -x utils.ind_html

xray_build.html: xray_build.txt
	help_to_html < xray_build.txt -o xray_build.html -t xray_build.toc_html -q menu/ -x xray_build.ind_html



table_of_contents: analysis.html auto_seq.html auto_stuff.html build.html  \
	build_extend.html build_main.html build_resi_auto.html center.html  \
	communication.html complete_list.html define.html dens_mod.html  \
	depp_mini.html depp_pages.html dial_ps.html dials.html display_long.html  \
	display_short.html energy.html hbonds.html history.html  \
	history_flags.html image_col.html image_col2.html image_data.html  \
	image_do.html image_light.html image_map.html image_map_envel.html  \
	image_menu.html image_sel.html kick_stuff.html kicks.html  \
	make_delete.html map_calc.html map_edit.html map_mask.html  \
	menu_structure.html minimize.html modeler.html nice_sel.html nmol.html  \
	origin_of_the_name.html refine.html rename.html rms_fit.html  \
	secondary.html select.html setup.html short_energy.html trace.html  \
	un_do.html use_atoms.html utils.html xray_build.html 
	cat ../dial_mod_toc_head.HTML \depp_pages.html complete_list.html menu_structure.html  \
	communication.html analysis.html auto_seq.html auto_stuff.html  \
	build.html build_extend.html build_main.html build_resi_auto.html  \
	center.html define.html dens_mod.html depp_mini.html dial_ps.html  \
	dials.html display_long.html display_short.html energy.html hbonds.html  \
	history.html history_flags.html image_col.html image_col2.html  \
	image_data.html image_do.html image_light.html image_map.html  \
	image_map_envel.html image_menu.html image_sel.html kick_stuff.html  \
	kicks.html make_delete.html map_calc.html map_edit.html map_mask.html  \
	minimize.html modeler.html nice_sel.html nmol.html  \
	origin_of_the_name.html refine.html rename.html rms_fit.html  \
	secondary.html select.html setup.html short_energy.html trace.html  \
	un_do.html use_atoms.html utils.html xray_build.html \
	../users_guide_tail.HTML > dial_mod_toc.html
	cat *.ind_html > dialog_manual.all_ind_html