set vari IATOM int atom sele pair site 1 end if ( IATOM .le. 0 ) return set vari XATOM int atom sele by pair atom numb IATOM end if ( XATOM .le. 0 ) return ! show vari IATOM ! show vari XATOM set vari CHR1 char seq sele by resi atom numb IATOM end set vari CHR2 char seq sele by resi atom numb XATOM end !show vari CHR* if ( CHR1 .eq. CHR2 ) then key half_wat sele half_wat .o atom numb IATOM end else key out sele out .o by seq atom numb XATOM .a resi name HOH end end_if ! wr sele out end seq ! wr sele by seq atom numb IATOM .o by seq atom numb XATOM end pair dele pair sele by seq atom numb IATOM end sele by seq atom numb XATOM end dele pair sele by seq atom numb XATOM end sele by seq atom numb IATOM end ! wr pair rewind file